VISDB Viral Integration Site DataBase

VIS ID

TVIS30002701

Fusion event

HIV-THRA integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.1

Reference genome

Start

End

38220478/40064225 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-18a-5p ; hsa-mir-375 ; hsa-mir-877-5p ; hsa-mir-330-3p ; hsa-mir-15b-5p ; hsa-mir-143-5p ; hsa-mir-1263 ; hsa-mir-6869-5p ; hsa-mir-4473 ; hsa-mir-4671-3p ; hsa-mir-4731-5p ; hsa-mir-4707-3p ; hsa-mir-6499-3p ; hsa-mir-4487 ; hsa-mir-454-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-3174 ; hsa-mir-708-5p ; hsa-mir-3139 ; hsa-mir-28-5p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-6825-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-7106-5p ; hsa-mir-149-3p ; hsa-mir-765 ; hsa-mir-7154-3p ; hsa-mir-5004-5p ; hsa-mir-140-3p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-4739 ; hsa-mir-574-5p ; hsa-mir-135b-3p ; hsa-mir-4278 ; hsa-mir-6867-5p ; hsa-mir-6848-5p ; hsa-mir-6846-5p ; hsa-mir-185-3p ; hsa-mir-4741 ; hsa-mir-4675 ; hsa-mir-7974 ; hsa-mir-6732-5p ; hsa-mir-6805-5p ; hsa-mir-6749-3p ; hsa-mir-6826-3p ; hsa-mir-615-5p ; hsa-mir-3663-5p ; hsa-mir-7152-3p ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-2276-5p ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-3688-5p ; hsa-mir-891a-3p

Nearest miRNA

hsa-mir-1180/Upstream/37816; hsa-mir-10226/Downstream/97708;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/818, chr17-CpG: 18/Downstream/24940

Nearest cancer related gene

THRA(OG, No orient, 0)

Upstream sequence

GGACACACCCACATGGGGACAAGGGAAGAGACAGGCTGCTGCTGCACCGTGGAGCTCTGAGGGGTGGGATATACCCATGGGAGACCAAGAGCATGGGGAC

Downstream sequence

CGATCCATGCACATACCCACGCACAGGGTCACACGTAGATGCTGTCACACACTGGGGCAAGGAGGAGTTGCTGTCACCCACACATAAAAAGTCACTGTCA