Basic Information
VIS ID
TVIS30002704
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
38734128/40577876 (Hg38)
End
38734128/40577876 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/384213; hsa-mir-10226/Downstream/939288;
Nearest TSS
ENST00000595228/Upstream/12404; ENST00000619697/Downstream/53885;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/133822, chr17-CpG: 69/Downstream/69816
Nearby gene
CCR7(No orient, 12392)
Upstream sequence
TTGCACACTTGGTCTCAGGAGACTCCAGTTTCAGTTTCTTAGCTGGTTCTCTGAGTGAGGTGATGGGGAATCCCTAGCATTTCTTAGTACTGATTGTGAG
Downstream sequence
CTTCCCCTCTGCATGTTAGCATGCAGTTCGTGACGATTCACTACAAATCTGCTCTTTATGGAGGGAGAGTATAGGGGGAGCCCAGTATCACTTTCCAAAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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