Basic Information
VIS ID
TVIS30002725
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
41548062/43470694 (Hg38)
End
41548062/43470694 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1180/Upstream/25809; hsa-mir-10226/Downstream/737077;
Nearest TSS
ENST00000595228/Upstream/25987; ENST00000605777/Downstream/13171;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/70580, chr17-CpG: 28/Downstream/12978
Nearby gene
DHX8(No orient, 13223)
Upstream sequence
ggagatcaagaccatcctggctaacatggtgaaaccccatctctactaaaaaaaatacaaaaacttagctgggcatggtggcaggtgtctgtagtcccag
Downstream sequence
ctacttgggaggctgaggcaggagaatggcgtgaacccgggaggtggagattgcagtgagccgagattggccactgcactccagcctgggcgacagagca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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