Basic Information
VIS ID
TVIS30002731
Fusion event
HIV-MAP3K14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.31
Reference genome
GRCh37/hg19
Start
43375804/45298438 (Hg38)
End
43375804/45298438 (Hg38)
Orient
+
Location type
Intronic
Target gene
MAP3K14
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-520e ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-519d-3p ; hsa-mir-93-5p ; hsa-mir-20b-5p ; hsa-mir-17-5p ; hsa-mir-34a-5p
Nearest miRNA
hsa-mir-1180/Upstream/184005; hsa-mir-10226/Downstream/176925;
Nearest TSS
ENST00000595228/Upstream/7462; ENST00000592389/Downstream/18579;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/35973, chr17-CpG: 108/Downstream/18087
Upstream sequence
ggcagaaataaggcaaaatattagcatgtcattaaccacagtacatgtgagtagattacaaaacagcaaaccagattggattttaaaagatccagctaga
Downstream sequence
tgctgactaaaagaaacaaaacaaaattatccagaaaagttggaaataaagacatagaaagagatgtgccaggccaatattaaccacaaagaagtaatat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate