VISDB Viral Integration Site DataBase

VIS ID

TVIS30002743

Fusion event

HIV-CDC27 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.32

Reference genome

Start

End

45249734/47172368 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-32-5p ; hsa-mir-16-5p ; hsa-mir-223-3p ; hsa-mir-539-5p ; hsa-mir-4470 ; hsa-mir-491-3p ; hsa-mir-4275 ; hsa-mir-767-5p ; hsa-mir-502-3p ; hsa-mir-501-3p ; hsa-mir-497-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-3148 ; hsa-mir-3917 ; hsa-mir-590-3p ; hsa-mir-4282 ; hsa-mir-548c-3p ; hsa-mir-3074-5p ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-548v ; hsa-mir-187-5p ; hsa-mir-1283 ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-944 ; hsa-mir-10a-3p ; hsa-mir-1253 ; hsa-mir-5579-5p ; hsa-mir-5197-3p ; hsa-mir-4311 ; hsa-mir-5583-3p ; hsa-mir-5701 ; hsa-mir-5588-5p ; hsa-mir-4799-3p ; hsa-mir-4720-5p ; hsa-mir-6868-5p ; hsa-mir-3128 ; hsa-mir-3126-3p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-218-2-3p ; hsa-mir-27a-3p

Nearest miRNA

hsa-mir-1180/Upstream/199268; hsa-mir-10226/Downstream/860514;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/71979, chr17-CpG: 64/Downstream/16517

Upstream sequence

TACAAGAAACCAAGGAAATAATACAATGAAGACAATCATGGTATTCTCTGTAAATATTTAAGAAAAGCATACACACACAGAAACACCCCTGCCTTTAAAC

Downstream sequence

AGACTACCAGTAAAGGATCTTGTTTTTAGGTAATATTTTTCTAATAAATCTTTCGGGAGGATAGAAGTCAAATTTCATTAGCAAGAGAAACCTGAGTGTA