VISDB Viral Integration Site DataBase

VIS ID

TVIS30002756

Fusion event

HIV-ZNF652 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.33

Reference genome

Start

End

47409098/49331736 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-186-5p ; hsa-mir-132-3p ; hsa-mir-128-3p ; hsa-mir-221-3p ; hsa-mir-215-5p ; hsa-mir-181a-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-let-7e-5p ; hsa-let-7b-5p ; hsa-mir-548c-3p ; hsa-mir-203a-3p ; hsa-mir-7703 ; hsa-mir-548a-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-26a-1-3p ; hsa-mir-26a-2-3p ; hsa-mir-6731-3p ; hsa-mir-4639-5p ; hsa-mir-5580-3p ; hsa-mir-421 ; hsa-mir-3065-5p ; hsa-mir-548s ; hsa-mir-3190-5p ; hsa-mir-3672 ; hsa-mir-6864-3p ; hsa-mir-4695-3p ; hsa-mir-548v ; hsa-mir-379-3p ; hsa-mir-382-5p ; hsa-mir-218-5p ; hsa-mir-431-5p ; hsa-mir-654-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-571 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-219a-1-3p ; hsa-mir-526b-3p ; hsa-mir-93-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-106a-5p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-4658 ; hsa-mir-6790-5p ; hsa-mir-4758-5p ; hsa-mir-1238-5p ; hsa-mir-98-3p ; hsa-let-7f-1-3p ; hsa-let-7b-3p ; hsa-let-7a-3p ; hsa-mir-187-5p ; hsa-mir-4745-5p ; hsa-mir-4666a-3p ; hsa-mir-4481 ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-222-3p ; hsa-mir-140-5p ; hsa-mir-4798-5p ; hsa-mir-889-3p ; hsa-mir-5692b ; hsa-mir-5692c ; hsa-mir-302f ; hsa-mir-5692a ; hsa-mir-580-3p ; hsa-mir-124-5p ; hsa-mir-539-5p ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-4272 ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-202-5p ; hsa-mir-337-3p ; hsa-mir-3927-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-4673 ; hsa-mir-766-3p ; hsa-mir-4645-5p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-4742-5p ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-508-5p ; hsa-mir-7641 ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-138-1-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6748-3p ; hsa-mir-660-3p ; hsa-mir-4284 ; hsa-mir-2276-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-6741-3p ; hsa-mir-1304-3p ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-1228-5p ; hsa-mir-513b-5p ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-3926 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-624-3p ; hsa-mir-5583-3p ; hsa-mir-3974

Nearest miRNA

hsa-mir-10226/Upstream/43282; hsa-mir-1250/Downstream/179081;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/71105, chr17-CpG: 122/Downstream/29808

Upstream sequence

attttataaaaaataaaaaaataaaaaaataaaaatCACAAATATTTTAGATTTGTGGATAACATCAGAAAATGCTGGGAATTTATTTTATACATTTGGC

Downstream sequence

CTACAAAAAGACAAAGGAGTGTTATTGTTTTCTCATTAACAAAAATTTTTTGACACTTCAAAAATTAACATTTTGTATaaaaattagccatgcatggtag