Basic Information
VIS ID
TVIS30002759
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
47847827/49770465 (Hg38)
End
47847827/49770465 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/259565; hsa-mir-1250/Downstream/998185;
Nearest TSS
ENST00000595228/Upstream/6298; ENST00000506533/Downstream/18090;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/6282, chr17-CpG: 67/Downstream/18147
Nearby gene
FAM117A(No orient, 6309)
Upstream sequence
gaaaaaattatgctaaatgaaagaagccaggcgcaaagaactacatattatatgattccatgtatatgaaatgtccagaaacgcaaatttatagagagag
Downstream sequence
caagcagatttgtgattgcctaggactggaggtgggagcagggattacctgccaatggacactttttcgaactctttggggtgatgggaatgtttctatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate