VISDB Viral Integration Site DataBase

VIS ID

TVIS30002760

Fusion event

HIV-KAT7 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q21.33

Reference genome

Start

End

47891926/49814564 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-106b-5p ; hsa-let-7a-2-3p ; hsa-let-7g-3p ; hsa-mir-142-3p ; hsa-mir-143-3p ; hsa-mir-562 ; hsa-mir-3177-5p ; hsa-mir-4756-3p ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-30b-3p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-1273h-5p ; hsa-mir-4280 ; hsa-mir-4797-5p ; hsa-mir-511-5p ; hsa-mir-6830-3p ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-4719 ; hsa-mir-5582-5p ; hsa-mir-548an ; hsa-mir-124-3p ; hsa-mir-5698 ; hsa-mir-4642 ; hsa-mir-143-5p ; hsa-mir-6879-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-6787-3p ; hsa-mir-5693 ; hsa-mir-6736-3p ; hsa-mir-500b-3p ; hsa-mir-6794-3p ; hsa-mir-4639-3p ; hsa-mir-3664-5p ; hsa-mir-106a-3p ; hsa-mir-4684-3p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-6823-3p ; hsa-mir-2114-3p ; hsa-mir-3192-5p ; hsa-mir-4257 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-7851-3p ; hsa-mir-6765-5p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-3656 ; hsa-mir-6087 ; hsa-mir-3197 ; hsa-mir-6500-3p ; hsa-mir-3614-5p

Nearest miRNA

hsa-mir-10226/Upstream/303664; hsa-mir-1250/Downstream/954086;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/25202, chr17-CpG: 77/Downstream/36542

Upstream sequence

gattgtgacgttcctttgatcttttaacagtccagtatgattggtgatatttcccatattttatatacaggaaaactaagactgagagaggtaacttacc

Downstream sequence

taaaatcatacaggcagaaagAGTGTCTGAAGTAAAAGTTCTTGAAATTTTTAACCTTAACAAACATCTGCTCTGCTTTTTAGTAATTTGGGATAGGTTA