Basic Information
VIS ID
TVIS30002761
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q21.33
Reference genome
GRCh37/hg19
Start
48994966/50917605 (Hg38)
End
48994966/50917605 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/148875; hsa-mir-1250/Downstream/5973665;
Nearest TSS
ENST00000595228/Upstream/7373; ENST00000506394/Downstream/26499;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/50023, chr17-CpG: 53/Downstream/13654
Nearby gene
SPAG9(No orient, 44569)
Nearest cancer related gene
SPAG9(OG, No orient, 44569)
Upstream sequence
GGCCCTCCCCACACTGCATGCTGGCTTGTTTTTCATGCAAAACCATGTTATGTAAATCAGTGCTGGGTTGAGCACACTCAAGTCAGAGTCACGAATTGGG
Downstream sequence
TCCCCCACCGCCCATCCAGGGTGTCTGAAGGCCTAGGCCAGCATGCCCATTATTCAGCCAGAGCAGGTGGCCGAGCCAGCTGGGCTCGTCCCCAAATACT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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