Basic Information
VIS ID
TVIS30002767
Fusion event
HIV-HSF5 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh37/hg19
Start
56509038/58431677 (Hg38)
End
56509038/58431677 (Hg38)
Orient
+
Location type
Intronic
Target gene
HSF5
miRNAs that regulate target gene
hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-4330 ; hsa-mir-4733-5p ; hsa-mir-5571-5p
Nearest miRNA
hsa-mir-10226/Upstream/95655; hsa-mir-1250/Downstream/706081;
Nearest TSS
ENST00000595228/Upstream/14082; ENST00000580769/Downstream/56707;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/79132, chr17-CpG: 117/Downstream/55816
Upstream sequence
tcactctgtaagaccctgactaatacacatACCAAAACATATCTTAGTTTTCAGTATCAGAGCATGGTAATGAGATATGGAATGGTGTCTTTTGTAAAAC
Downstream sequence
ATACACAATTCTTGTTTCCAGCAGAAGAGAACTGTAGAAGACACcacttgtgtaaccctattggacctagcacagtaccaagcccaaggcaggcattcag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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