Basic Information
VIS ID
TVIS30002778
Fusion event
HIV-TBC1D3P1-DHX40P1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
58094232/60016871 (Hg38)
End
58094232/60016871 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
TBC1D3P1-DHX40P1
Nearest miRNA
hsa-mir-10226/Upstream/175534; hsa-mir-1250/Downstream/26154;
Nearest TSS
ENST00000595228/Upstream/51775; ENST00000589740/Downstream/31445;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/52133, chr17-CpG: 179/Downstream/8538
Upstream sequence
CCTCAGAGACCTGCTGGACAACAGCCCTGAGGCCGGGCCAGGCGTCCCCTCACCCTGTGGCCATAACCCTTGCATCTCACCGGGGTTGTCTCCAAGTAGA
Downstream sequence
CAGGGCCAGACCCTCAGGCTGCCCAGCTCCTCTTGTGCTCACTTGCCGACAGAACTGCTGAGCGCCCAGGGGCCTGACCTAGCCCAGTCTCCATTCCCAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate