VISDB Viral Integration Site DataBase

VIS ID

TVIS30002784

Fusion event

HIV-DCAF7 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr17

Cytoband

q23.3

Reference genome

Start

End

61639490/63562129 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-193b-3p ; hsa-mir-7-5p ; hsa-mir-19b-3p ; hsa-mir-16-5p ; hsa-mir-1229-3p ; hsa-mir-760 ; hsa-mir-326 ; hsa-mir-222-3p ; hsa-mir-26a-5p ; hsa-mir-18a-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-mir-193a-3p ; hsa-mir-494-3p ; hsa-mir-588 ; hsa-mir-641 ; hsa-mir-875-3p ; hsa-mir-3190-5p ; hsa-mir-4252 ; hsa-mir-4261 ; hsa-mir-3617-5p ; hsa-mir-4701-5p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-590-3p ; hsa-mir-4282 ; hsa-mir-3681-3p ; hsa-mir-19a-3p ; hsa-mir-6748-5p ; hsa-mir-18b-5p ; hsa-mir-583 ; hsa-mir-1253 ; hsa-mir-1321 ; hsa-mir-3185 ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-4735-3p ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-6077 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6834-5p ; hsa-mir-6873-5p ; hsa-mir-7106-5p ; hsa-mir-9500 ; hsa-mir-27a-3p ; hsa-mir-27b-3p ; hsa-mir-513a-5p ; hsa-mir-3164 ; hsa-mir-3194-3p ; hsa-mir-5190 ; hsa-mir-5691 ; hsa-mir-6728-3p ; hsa-mir-6805-3p ; hsa-mir-6820-3p ; hsa-mir-6828-3p ; hsa-mir-6823-5p ; hsa-mir-573 ; hsa-mir-1262 ; hsa-mir-3175 ; hsa-mir-3616-5p ; hsa-mir-3665 ; hsa-mir-4434 ; hsa-mir-4516 ; hsa-mir-4701-3p ; hsa-mir-4716-3p ; hsa-mir-4723-5p ; hsa-mir-4795-5p ; hsa-mir-5698 ; hsa-mir-5703 ; hsa-mir-6736-5p ; hsa-mir-6769a-5p ; hsa-mir-6770-5p ; hsa-mir-6794-5p ; hsa-mir-6769b-5p ; hsa-mir-6870-5p ; hsa-mir-6878-5p ; hsa-mir-7111-5p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-2355-5p ; hsa-mir-4683 ; hsa-mir-2861 ; hsa-mir-7155-3p ; hsa-mir-3136-3p ; hsa-mir-767-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-3918 ; hsa-mir-4512 ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-6864-3p ; hsa-mir-4799-5p ; hsa-mir-3672 ; hsa-mir-1200 ; hsa-mir-873-3p ; hsa-mir-4329 ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-5680 ; hsa-mir-1183 ; hsa-mir-605-5p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-6875-3p ; hsa-mir-4778-3p ; hsa-mir-892b ; hsa-mir-6826-3p ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-4269 ; hsa-mir-6715b-5p ; hsa-mir-6809-5p ; hsa-mir-657 ; hsa-mir-556-3p ; hsa-mir-335-3p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-6832-3p ; hsa-mir-1248 ; hsa-mir-6868-3p ; hsa-mir-1237-3p ; hsa-mir-8057 ; hsa-mir-891a-3p ; hsa-mir-143-5p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-564 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-2276-3p ; hsa-mir-1304-3p ; hsa-mir-5693 ; hsa-mir-6890-3p ; hsa-mir-550b-2-5p ; hsa-mir-5006-5p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-6508-3p ; hsa-mir-4529-5p ; hsa-mir-4755-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-6889-3p ; hsa-mir-6884-3p ; hsa-mir-665 ; hsa-mir-484 ; hsa-mir-3155b ; hsa-mir-3155a ; hsa-mir-6895-5p ; hsa-mir-548p

Nearest miRNA

hsa-mir-10226/Upstream/617817; hsa-mir-1250/Downstream/938645;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/11200, chr17-CpG: 52/Downstream/38666

Upstream sequence

TTAGGGGGAAAAAGAACATGTTGAAAAACAGAGGAACACTTACCCTACCAGATTAGAATAAACATACTGGAATTGATatagccagagagataggtggaac

Downstream sequence

tgaatagaatatttcaaagacaactttagtatatataaatgtgaaatatgtgataagatagaactgtaattcactgggtaaaagattacatcgtatggca