Basic Information
VIS ID
TVIS30002795
Fusion event
HIV-LRRC37A3 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
62911450/64915332 (Hg38)
End
62911450/64915332 (Hg38)
Orient
+
Location type
Intronic
Target gene
LRRC37A3
Nearest miRNA
hsa-mir-10226/Upstream/93230; hsa-mir-1250/Downstream/1871740;
Nearest TSS
ENST00000595228/Upstream/9530; ENST00000583416/Downstream/3453;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/77922, chr17-CpG: 85/Downstream/3732
Upstream sequence
acccttataaatatgtacaCTCTACCTTAAGGAAACAGTGAAAAAAGGTGTGGAACAACGACCACAACAAAATCAAAGAGGAAAATCTTTGTGAACTTGG
Downstream sequence
GTTTGTCAGGCCAGGAATCAGCAAACCATGGCCAATCCACTACCTGTTTTTCTaataatcaaaacaatataattgataatttgtaaattatgtgaaattc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate