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Viral Integration Site DataBase
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TVIS30002801
Basic Information
VIS ID
TVIS30002801
Fusion event
HIV-BPTF integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
65870893/67874777 (Hg38)
End
65870893/67874777 (Hg38)
Orient
-
Location type
Intronic
Target gene
BPTF
miRNAs that regulate target gene
hsa-mir-335-5p
;
hsa-mir-877-3p
;
hsa-mir-455-3p
;
hsa-mir-33b-5p
;
hsa-mir-342-3p
;
hsa-mir-378a-3p
;
hsa-mir-222-3p
;
hsa-mir-204-5p
;
hsa-mir-181b-5p
;
hsa-mir-25-3p
;
hsa-let-7c-5p
;
hsa-let-7a-5p
;
hsa-mir-7855-5p
;
hsa-mir-4642
;
hsa-mir-1273e
;
hsa-mir-4710
;
hsa-mir-4792
;
hsa-mir-650
;
hsa-mir-3612
;
hsa-mir-4722-5p
;
hsa-mir-2467-3p
;
hsa-mir-6086
;
hsa-mir-377-5p
;
hsa-mir-1827
;
hsa-mir-4537
;
hsa-mir-1273f
;
hsa-mir-219b-3p
;
hsa-mir-4649-3p
;
hsa-mir-1247-3p
;
hsa-mir-4768-3p
;
hsa-mir-4257
;
hsa-mir-940
;
hsa-mir-6893-5p
;
hsa-mir-6808-5p
;
hsa-mir-6511a-5p
;
hsa-mir-1910-3p
;
hsa-mir-302f
;
hsa-mir-607
;
hsa-mir-3671
;
hsa-mir-4724-3p
;
hsa-mir-524-5p
;
hsa-mir-520d-5p
;
hsa-mir-3121-3p
;
hsa-mir-5001-3p
;
hsa-mir-891a-3p
;
hsa-mir-4772-3p
;
hsa-mir-6787-3p
;
hsa-mir-1304-3p
;
hsa-mir-6736-3p
;
hsa-mir-6890-3p
;
hsa-mir-3677-5p
;
hsa-mir-216a-5p
;
hsa-mir-32-5p
;
hsa-mir-363-3p
;
hsa-mir-367-3p
;
hsa-mir-4317
;
hsa-mir-4325
;
hsa-mir-7703
;
hsa-mir-92a-3p
;
hsa-mir-92b-3p
Nearest miRNA
hsa-mir-10226/Upstream/403192; hsa-mir-1250/Downstream/549674;
Nearest TSS
ENST00000595228/Upstream/48635;
ENST00000544491/Downstream/143;
Nearest CpG islands
None/Target,
chr17-CpG: 26/Upstream/48855
,
chr17-CpG: 151/Downstream/118328
Upstream sequence
TTTCATAGGTCTAATGCTTTAAAAATACTTAATTTTTCCTCTTTAATAGCTTGTATTGAAACTCGTAAGTGACATTTGTGGTACTGTTCTATTTGGTTAT
Downstream sequence
ATATAGGAATAATTTTTTTGTTTGTTTTACACATTATAGAAGAAATTTTGGAATCCATAAGAGCCAAAAAGGGAGACATTGATAATGTTAAAAGCCCAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Active CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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