Basic Information
VIS ID
TVIS30002806
Fusion event
HIV-SLC25A19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
73281404/75285323 (Hg38)
End
73281404/75285323 (Hg38)
Orient
+
Location type
Intronic
Target gene
SLC25A19
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-let-7b-5p ; hsa-mir-543
Nearest miRNA
hsa-mir-10226/Upstream/536624; hsa-mir-1250/Downstream/120746;
Nearest TSS
ENST00000595228/Upstream/13925; ENST00000585081/Downstream/1400;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/13352, chr17-CpG: 66/Downstream/3776
Upstream sequence
acTATACCAGGGCTATGCTCAGATCTTCCTTCAGCCAACTGAAGATGGCCTGGCttcttttctttttttgagacagggtctggctgtgttgcccaggctg
Downstream sequence
aagtgcagtggcatgatcgtggctcactgcagcctccgcctcccgggctcagatgctgggattacaggtgtgagccactgagtccagcCCACGCCTGGCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate