Basic Information
VIS ID
TVIS30002822
Fusion event
HIV-RHBDF2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
74494129/76498047 (Hg38)
End
74494129/76498047 (Hg38)
Orient
-
Location type
Intronic
Target gene
RHBDF2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-7-5p ; hsa-mir-98-5p ; hsa-mir-615-3p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-2467-3p ; hsa-mir-3125 ; hsa-mir-3150b-3p ; hsa-mir-3179 ; hsa-mir-3202 ; hsa-mir-3622b-5p ; hsa-mir-3916 ; hsa-mir-4253 ; hsa-mir-4257 ; hsa-mir-4266 ; hsa-mir-4436b-3p ; hsa-mir-4458 ; hsa-mir-4476 ; hsa-mir-4500 ; hsa-mir-4632-5p ; hsa-mir-4688 ; hsa-mir-4695-5p ; hsa-mir-4779 ; hsa-mir-4784 ; hsa-mir-583 ; hsa-mir-6735-5p ; hsa-mir-6743-5p ; hsa-mir-6859-5p ; hsa-mir-6862-5p ; hsa-mir-6876-5p ; hsa-mir-6879-5p ; hsa-mir-765 ; hsa-mir-7843-5p
Nearest miRNA
hsa-mir-10226/Upstream/399971; hsa-mir-1250/Downstream/238403;
Nearest TSS
ENST00000595228/Upstream/4845; ENST00000590555/Downstream/3324;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/25973, chr17-CpG: 60/Downstream/2863
Upstream sequence
CTGCAGGAGCCGGGCACTGGGGCTGGAACTGCCTTCCAGTAGCTTTTGGACCACAAACAACTCCCAGCTGGGCGCCCGGATACATTTGCTGAAGGAGGGG
Downstream sequence
CCGTGGACACGGTGGCGCTTTGTACTTCCCGGAAGATGTGTTTTTCCTTACACCCATCCTAGGTCTCCTGGGAGGCAAAACGACGTTCCGGGCAGGCTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate