Basic Information
VIS ID
TVIS30002848
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
78484196/80510396 (Hg38)
End
78484196/80510396 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/90903; hsa-mir-1250/Downstream/614880;
Nearest TSS
ENST00000595228/Upstream/32553; ENST00000573746/Downstream/34423;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/31413, chr17-CpG: 27/Downstream/34554
Nearby gene
NPTX1(No orient, 33792)
Upstream sequence
TTTCACTCCACAGCGTGCGCTGAAGTGTTCGCAGCGGGTCCTGCACGGCCAGGCATGTCCTCCCCACGTTCCCAGCTGCGCACTGGACACACCCAAGTCA
Downstream sequence
CACTGGACCCTTCCTGATGCGCCACCGCCACGGAGGGTCCAAACCACTTCCGGCTTTAGATGGCTTTCTGCTTGGCCCACGCCTTCCTCATGCTCACCCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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