Basic Information
VIS ID
TVIS30002854
Fusion event
HIV-RPTOR integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
78688362/80714562 (Hg38)
End
78688362/80714562 (Hg38)
Orient
-
Location type
Intronic
Target gene
RPTOR
miRNAs that regulate target gene
hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-155-5p
Nearest miRNA
hsa-mir-10226/Upstream/295069; hsa-mir-1250/Downstream/410714;
Nearest TSS
ENST00000595228/Upstream/5629; ENST00000576366/Downstream/28725;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/169279, chr17-CpG: 30/Downstream/12465
Upstream sequence
gaaagattaaaatcatagagtatattctctgttcttgaaattcaaaattatggaatatctggagaagccccagatacttggaaatgaaataccacatgag
Downstream sequence
tcaaagacaaaatcataaaagaaaataaaaaataattcaaacctaaagataatgaaactatgacacccaaatttataggatttaggtgtaacagtgctta
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate