Basic Information
VIS ID
TVIS30002864
Fusion event
HIV-CCDC57 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
80094612/82136736 (Hg38)
End
80094612/82136736 (Hg38)
Orient
+
Location type
Intronic
Target gene
CCDC57
miRNAs that regulate target gene
hsa-mir-92a-3p
Nearest miRNA
hsa-mir-10226/Upstream/442867; hsa-mir-4525/Downstream/99932;
Nearest TSS
ENST00000595228/Upstream/2393; ENST00000579979/Downstream/14870;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/9279, chr17-CpG: 119/Downstream/75710
Upstream sequence
acccaggctggagtgcagtggtgcaatcgcggctcactgcagcctccacctcctgggctcaagcgatcctcccacctcagcctcccaagtagctgggacc
Downstream sequence
acacccagccaagttttttgttttttagtagagacagggtgtcactattctgcccaggttagtctcaaactcctagcctcaagtgatcctcctcccttgg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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