Basic Information
VIS ID
TVIS30002866
Fusion event
HIV-chr17 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
80294520/82336644 (Hg38)
End
80294520/82336644 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/99916; hsa-mir-4525/Downstream/331589;
Nearest TSS
ENST00000595228/Upstream/2570; ENST00000333437/Downstream/22603;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/2126, chr17-CpG: 25/Downstream/8926
Nearby gene
SECTM1(No orient, 2599)
Upstream sequence
caaagtgctgggattacaggcgtgagccactgtgcTGGCGGCATTTGCTTTTCTTTGTAACTTGATTCTCTGGGTTCCCTTGCCTTTCATCCTTGCCCAC
Downstream sequence
CCACGTGACTGCAGCCTGTGGGGCTTCCTCCTAATGTCCCGAAGATAACTCGTCATCCTTGACCCCGCCGCCACCTCGGGTTCTAGTGGAGGATGTGGCC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate