Basic Information
VIS ID
TVIS30002871
Fusion event
HIV-TBCD integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
80778182/82820306 (Hg38)
End
80778182/82820306 (Hg38)
Orient
+
Location type
Intronic
Target gene
TBCD
miRNAs that regulate target gene
hsa-mir-1-3p
Nearest miRNA
hsa-mir-10226/Upstream/151999;
Nearest TSS
ENST00000595228/Upstream/24211; ENST00000572984/Downstream/19716;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/5179, chr17-CpG: 18/Downstream/12186
Upstream sequence
acctcaagtgatctgcctgccttggcttcccaaagtgctgggattacaggcgtgaggcactgcgcccagccAACTGTACTATTTTGATAAAATGTATACA
Downstream sequence
TGTGCTCCTTATTATGCATTTTGTGGTTTTCATCAGTATTTTGCTTTTTGAAAAATGTCAAGTGTTCTGATCTCTTTGGACATTTTGTATGAACCCTATT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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