Basic Information
VIS ID
TVIS30002872
Fusion event
HIV-USP14 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
GRCh37/hg19
Start
198591/198591 (Hg38)
End
198591/198591 (Hg38)
Orient
-
Location type
Intronic
Target gene
USP14
miRNAs that regulate target gene
hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-26b-5p ; hsa-mir-204-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-4782-3p ; hsa-mir-635 ; hsa-mir-1262 ; hsa-mir-3662 ; hsa-mir-3714 ; hsa-mir-548an ; hsa-mir-4701-3p ; hsa-mir-451b ; hsa-mir-6736-5p ; hsa-mir-6774-5p ; hsa-mir-33a-3p ; hsa-mir-8068 ; hsa-mir-4776-3p ; hsa-mir-192-3p ; hsa-mir-5189-3p ; hsa-mir-6741-5p ; hsa-mir-140-3p ; hsa-mir-5187-3p ; hsa-mir-3689d ; hsa-mir-6738-3p ; hsa-mir-7641 ; hsa-mir-5001-3p ; hsa-mir-4727-5p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-891b ; hsa-mir-4695-3p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-320a
Nearest miRNA
hsa-mir-8078/Upstream/86252; hsa-mir-1-2/Downstream/3686762;
Nearest TSS
ENST00000575820/Upstream/2052; ENST00000581677/Downstream/17187;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/39280, chr18-CpG: 61/Downstream/69119
Upstream sequence
tccaggtgtgagccaccgcgcccagccCAGAGGTTTTTATACCTAAAAAAATACAATAATGGAAATTAGGAATTTGGAAAAATATACCTATTGGAGTGAT
Downstream sequence
CTTGAAGGATAATGGGATTATTCATTATGTTTTGattaatataattattttaaatttatttCTTGAAGGATATTTATTATTTTTTCCTAAGAACATCTTT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate