Fusion event
HIV-SMCHD1 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
2688843/2688845 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-8078/Upstream/2576506; hsa-mir-1-2/Downstream/1196508;
Nearest cancer related gene
Upstream sequence
AGGTACAATACATTTTAACTCATAATTATAAATTTACTCCTTTGGATAGACGGTGGGACAGAACTTAACTTGAAAGTATGAAATTTTCAAAATGAGTTAC
Downstream sequence
CCTTTCCTTTAGTCATAATAACAAAAATGGGCTTTCTCAAGCCAAAAATCTTCAGACAAGTTGTCTCATAAAGCTTACTAAGCTTTCTGTAAATTGCTTG
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.