Basic Information
VIS ID
TVIS30002876
Fusion event
HIV-SMCHD1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.32
Reference genome
End
2688843/2688845 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-8078/Upstream/2576506; hsa-mir-1-2/Downstream/1196508;
Nearest cancer related gene
SMCHD1(TSG, No orient, 0)
Upstream sequence
AGGTACAATACATTTTAACTCATAATTATAAATTTACTCCTTTGGATAGACGGTGGGACAGAACTTAACTTGAAAGTATGAAATTTTCAAAATGAGTTAC
Downstream sequence
CCTTTCCTTTAGTCATAATAACAAAAATGGGCTTTCTCAAGCCAAAAATCTTCAGACAAGTTGTCTCATAAAGCTTACTAAGCTTTCTGTAAATTGCTTG
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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