Basic Information
VIS ID
TVIS30002890
Fusion event
HIV-CEP192 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
13035646/13035647 (Hg38)
End
13035646/13035647 (Hg38)
Orient
-
Location type
Intronic
Target gene
CEP192
miRNAs that regulate target gene
hsa-mir-301a-3p ; hsa-mir-186-5p ; hsa-mir-27b-3p ; hsa-mir-142-3p
Nearest miRNA
hsa-mir-3976/Upstream/1380706; hsa-mir-1-2/Downstream/424300;
Nearest TSS
ENST00000575820/Upstream/5834; ENST00000585938/Downstream/20984;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/43950, chr18-CpG: 105/Downstream/100950
Upstream sequence
ccctcccacaacatttgagaattctgggagataacaattcaagttgagatttgggtggagacacagccaaaccatattaCCCTCTTTTGGGCCGAGTTTC
Downstream sequence
CTACTTCCCTTCTCTTGGCTGTCAGATTTGGTTGGTTGCTCCTTTCATCTTTTAGGGCAGTGGTTTTTAACTTAGCTTGAGTCATAGATTCCACAATGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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