VISDB Viral Integration Site DataBase

VIS ID

TVIS30002895

Fusion event

HIV-RNF125 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

q12.1

Reference genome

Start

End

29628602/32048639 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-151a-3p ; hsa-mir-320a ; hsa-mir-5579-3p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-5197-3p ; hsa-mir-32-3p ; hsa-mir-6507-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-891b ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-4766-5p ; hsa-mir-146a-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-759 ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-4714-5p ; hsa-mir-508-5p ; hsa-mir-3145-5p ; hsa-mir-4797-5p ; hsa-mir-1227-3p ; hsa-mir-1228-3p ; hsa-mir-1273f ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-25-5p ; hsa-mir-3174 ; hsa-mir-34b-3p ; hsa-mir-3612 ; hsa-mir-3614-5p ; hsa-mir-3689d ; hsa-mir-377-5p ; hsa-mir-3929 ; hsa-mir-4252 ; hsa-mir-4257 ; hsa-mir-4419b ; hsa-mir-4459 ; hsa-mir-4478 ; hsa-mir-4534 ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4649-3p ; hsa-mir-4695-5p ; hsa-mir-4722-5p ; hsa-mir-4785 ; hsa-mir-4802-5p ; hsa-mir-485-5p ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-6500-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-6746-5p ; hsa-mir-6807-5p ; hsa-mir-6808-5p ; hsa-mir-6851-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-7160-5p ; hsa-mir-8082 ; hsa-mir-940 ; hsa-mir-1289 ; hsa-mir-129-5p ; hsa-mir-143-3p ; hsa-mir-3198 ; hsa-mir-4294 ; hsa-mir-4309 ; hsa-mir-4708-5p ; hsa-mir-4770 ; hsa-mir-6088 ; hsa-mir-6514-5p ; hsa-mir-8055

Nearest miRNA

hsa-mir-1-2/Upstream/1749679; hsa-mir-122/Downstream/3543098;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/29142, chr18-CpG: 173/Downstream/43155

Upstream sequence

ctgagactcagagaggttaagtcaatcatacaaggtcacacagctggtaagtaacaaagacagaatttgaatacagtgatctagctccagggctgtgtgg

Downstream sequence

gaaacccctgtggtctataGCAAGTTCAAGAGAAAAGCATGCAGAGATATTTGTTATTGATCTTAATGGCCTAGGGAGTTGGCAATTGGAATGGCTAAGT