Basic Information
VIS ID
TVIS30002900
Fusion event
HIV-chr18 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
52318847/54651616 (Hg38)
End
52318847/54651616 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA18B
Nearest miRNA
hsa-mir-1-2/Upstream/1414426; hsa-mir-122/Downstream/827605;
Nearest TSS
ENST00000575820/Upstream/60457; ENST00000590604/Downstream/66244;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/292992, chr18-CpG: 30/Downstream/176757
Nearby gene
DYNAP(No orient, 52123)
Upstream sequence
tcaagtgatcctccacctcagcctcccaagtagctggaactacaggcatgcaccactatgcccagataatttttgtacttttagtagagatggagttttg
Downstream sequence
ccatgttgcccaggctagtattgaactcctgggctcaagtgatctgcccatctcggcctcccaaagtgctgggattacaggcctgagccactgtgcccag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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