VISDB Viral Integration Site DataBase

VIS ID

TVIS30002905

Fusion event

HIV-BCL2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr18

Cytoband

q21.33

Reference genome

Start

End

60898616/63231383 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-34b-5p ; hsa-mir-21-5p ; hsa-mir-204-5p ; hsa-mir-153-3p ; hsa-let-7a-5p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-34a-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-34b-3p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-34c-5p ; hsa-mir-33b-5p ; hsa-mir-192-5p ; hsa-mir-195-5p ; hsa-mir-630 ; hsa-mir-451a ; hsa-mir-365a-3p ; hsa-mir-125b-5p ; hsa-mir-449a ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-429 ; hsa-mir-136-5p ; hsa-mir-7-5p ; hsa-mir-148a-3p ; hsa-mir-24-2-5p ; hsa-mir-182-5p ; hsa-mir-196b-5p ; hsa-mir-143-3p ; hsa-mir-375 ; hsa-mir-215-5p ; hsa-mir-103a-3p ; hsa-mir-96-5p ; hsa-mir-205-5p ; hsa-mir-126-3p ; hsa-mir-18a-5p ; hsa-mir-497-5p ; hsa-mir-1915-3p ; hsa-mir-206 ; hsa-mir-34a-3p ; hsa-mir-448 ; hsa-mir-125a-5p ; hsa-mir-708-5p ; hsa-mir-184 ; hsa-mir-30b-5p ; hsa-mir-135a-5p ; hsa-mir-224-5p ; hsa-mir-503-5p ; hsa-mir-494-3p ; hsa-mir-211-5p ; hsa-mir-9-5p ; hsa-mir-139-5p ; hsa-mir-26a-1-3p ; hsa-mir-1284 ; hsa-mir-376c-3p ; hsa-mir-190b ; hsa-mir-15a-3p ; hsa-mir-16-1-3p ; hsa-mir-98-5p

Nearest miRNA

hsa-mir-1-2/Upstream/4780225; hsa-mir-5011/Downstream/3850201;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/514245, chr18-CpG: 236/Downstream/86887

Nearest cancer related gene

BCL2(OG, No orient, 0)

Upstream sequence

taaaatcagcaactagataaatatgtcttctctctcaccactctattcattattgtatgagataccttgctgatgtaataaagcaagaaaaaggagtaag

Downstream sequence

aaaatcagaattagaaatgaagggggaatatgtggcattatttgcaaatgataagattgtctacatagataatccatgagaaactatgaacaattacaag