Basic Information
VIS ID
TVIS30002909
Fusion event
HIV-ATP9B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
GRCh37/hg19
Start
76943675/79183675 (Hg38)
End
76943675/79183675 (Hg38)
Orient
+
Location type
Intronic
Target gene
ATP9B
Nearest miRNA
hsa-mir-1-2/Upstream/6330293;
Nearest TSS
ENST00000575820/Upstream/29173; ENST00000587878/Downstream/23261;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/37295, chr18-CpG: 31/Downstream/41839
Upstream sequence
TTATAGTTTCTGTTGCCCATATAAAAGTTCAGTGTATTTAGATAATGTGACCTACCAATATTTTTTTCAATGATTTCTGCTTTTTGGTTTTATGCTTTGA
Downstream sequence
CTATTTCTACTCATGattatattttaaataattagttttaaaataattCCTGCTTTCCATACAAAATCTGATTATCTACCATTTTTGGGGGGAGtatttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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