VISDB Viral Integration Site DataBase

VIS ID

TVIS30002912

Fusion event

HIV-R3HDM4 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

904649/904649 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-151a-5p ; hsa-mir-29c-3p ; hsa-mir-24-3p ; hsa-mir-301b-3p ; hsa-mir-92a-3p ; hsa-mir-3679-3p ; hsa-mir-2355-5p ; hsa-mir-4477a ; hsa-mir-3663-3p ; hsa-mir-361-3p ; hsa-mir-4286 ; hsa-mir-6501-3p ; hsa-mir-10a-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-1275 ; hsa-mir-28-5p ; hsa-mir-3139 ; hsa-mir-3155a ; hsa-mir-3155b ; hsa-mir-342-5p ; hsa-mir-4269 ; hsa-mir-4433a-3p ; hsa-mir-4462 ; hsa-mir-4505 ; hsa-mir-4514 ; hsa-mir-4525 ; hsa-mir-4633-3p ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-4665-5p ; hsa-mir-4692 ; hsa-mir-4722-5p ; hsa-mir-4723-5p ; hsa-mir-4731-5p ; hsa-mir-4742-5p ; hsa-mir-484 ; hsa-mir-5010-5p ; hsa-mir-542-3p ; hsa-mir-5698 ; hsa-mir-5702 ; hsa-mir-5787 ; hsa-mir-602 ; hsa-mir-608 ; hsa-mir-625-5p ; hsa-mir-637 ; hsa-mir-6500-5p ; hsa-mir-6715b-5p ; hsa-mir-6737-5p ; hsa-mir-6747-5p ; hsa-mir-6768-5p ; hsa-mir-6808-5p ; hsa-mir-6812-5p ; hsa-mir-6819-5p ; hsa-mir-6870-5p ; hsa-mir-6890-5p ; hsa-mir-6893-5p ; hsa-mir-708-5p ; hsa-mir-7111-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-1302-11/Upstream/90996; hsa-let-7e/Downstream/911510;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/3517, chr19-CpG: 157/Downstream/7040

Upstream sequence

CAAgctgggcgcggtggctcatgcctgtaatcccagagctttgggaaggtgaggaggaaggacagcttgaggccaggagttcaagatcagcctgggcaac

Downstream sequence

atcacggtccccgctgctcaggaggctgaggagggaggatcacttgagcccagaaggtggaggctgcagtgagatgagatcgtaccactgcactccagcc