Basic Information
VIS ID
TVIS30002934
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
6596128/6596117 (Hg38)
End
6596128/6596117 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA19B
Nearest miRNA
hsa-mir-1227/Upstream/179606; hsa-let-7e/Downstream/140595;
Nearest TSS
ENST00000633603/Upstream/4965; ENST00000596543/Downstream/7986;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/5056, chr19-CpG: 22/Downstream/63758
Nearby gene
CD70(No orient, 4965)
Upstream sequence
gaaTGTGGATCCATATCGTGTACCTGAAGAACCTGGACCTTCCCACCTGAGTCACTTAGTGACTTGACCTGGCCTCTGACCACTTTCCAGTCTGTGCAGT
Downstream sequence
TCTGCTGGAGGTCATTTGCACCattttttattttttaatttttatttatttatttatttatttttgggacgcctttctctgtcacccaggctggagggca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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