VISDB Viral Integration Site DataBase

VIS ID

TVIS30002935

Fusion event

HIV-TNFSF14 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.3

Reference genome

Start

End

6666228/6666217 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-5698 ; hsa-mir-3689d ; hsa-mir-4309 ; hsa-mir-3198 ; hsa-mir-7641 ; hsa-mir-7977 ; hsa-mir-143-5p ; hsa-mir-3650 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-6499-3p ; hsa-mir-4695-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-4433b-5p ; hsa-mir-3156-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-188-3p ; hsa-mir-3691-5p ; hsa-mir-1255b-5p ; hsa-mir-1255a ; hsa-mir-6744-5p ; hsa-mir-4480 ; hsa-mir-4670-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-361-3p ; hsa-mir-1224-3p ; hsa-mir-3691-3p ; hsa-mir-2114-5p ; hsa-mir-3149 ; hsa-mir-4775 ; hsa-mir-411-5p ; hsa-mir-4735-5p ; hsa-mir-590-3p ; hsa-mir-4705 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6504-3p ; hsa-mir-4438

Nearest miRNA

hsa-mir-1227/Upstream/249706; hsa-let-7e/Downstream/70495;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/6134, chr19-CpG: 39/Downstream/40884

Upstream sequence

tgtggcgtctcacccctataatcccagcactttgggaggctgagacaggaagatcccctgagcccaggagtttgagtccaggagttccagatgaagtaac

Downstream sequence

atagggagaccctgtctctacaaaaaacaaaaaaattagctgggcatggtggcaggcacctgtagtcccagctgctggggaagctgaagtgggaggatcg