VISDB Viral Integration Site DataBase

VIS ID

TVIS30002942

Fusion event

HIV-PNPLA6 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

7611755/7546869 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-335-5p ; hsa-mir-34a-5p ; hsa-mir-103a-3p ; hsa-mir-15a-5p ; hsa-mir-214-3p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-4459 ; hsa-mir-4524a-5p ; hsa-mir-4716-3p ; hsa-mir-4722-5p ; hsa-mir-4723-5p ; hsa-mir-4779 ; hsa-mir-4524b-5p ; hsa-mir-5698 ; hsa-mir-6165 ; hsa-mir-6794-5p ; hsa-mir-6798-3p ; hsa-mir-6838-5p ; hsa-mir-6870-5p ; hsa-mir-7111-5p ; hsa-mir-610 ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-4640-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6799-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6837-5p ; hsa-mir-7113-5p ; hsa-mir-4685-5p ; hsa-mir-455-3p ; hsa-mir-6782-5p ; hsa-mir-6732-5p ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321

Nearest miRNA

hsa-mir-1227/Upstream/810091; hsa-let-7e/Downstream/70570;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/10747, chr19-CpG: 105/Downstream/3030

Upstream sequence

tatgtttcccaggctggtcttaaactcctgggctcaagtgatcctcccaccttggcctcccaaagtgcttggacatatgttttcatttctcttgggtata

Downstream sequence

tacctaggagttgaattgctgggttataagccaattcaattttttttttttttaagagggagtctcgctatgtcgcccaggctggagtgcagtggcgcga