VISDB Viral Integration Site DataBase

VIS ID

TVIS30002948

Fusion event

HIV-MYO1F integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.2

Reference genome

Start

End

8597239/8532355 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-574-5p ; hsa-mir-6818-3p ; hsa-mir-6873-3p ; hsa-mir-6867-5p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-6876-3p ; hsa-mir-626 ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-592 ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-597-5p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-6868-3p ; hsa-mir-6749-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-4469 ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-5088-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-629-3p ; hsa-mir-6867-3p ; hsa-mir-4448 ; hsa-mir-2276-3p ; hsa-mir-1307-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-1304-3p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-6890-3p ; hsa-mir-4713-5p ; hsa-mir-4284 ; hsa-mir-4638-5p ; hsa-mir-2116-3p ; hsa-mir-6741-3p ; hsa-mir-5193 ; hsa-mir-1224-3p ; hsa-mir-1306-5p ; hsa-mir-498 ; hsa-mir-6071 ; hsa-mir-6828-3p ; hsa-mir-6882-3p ; hsa-mir-3692-5p ; hsa-mir-93-3p ; hsa-mir-6722-5p ; hsa-mir-8070 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-6778-3p ; hsa-mir-4707-3p ; hsa-mir-18a-3p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-186-3p ; hsa-mir-3934-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6504-3p ; hsa-mir-3159 ; hsa-mir-552-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-5089-5p ; hsa-mir-6878-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-212-5p ; hsa-mir-512-3p ; hsa-mir-6882-5p ; hsa-mir-595 ; hsa-mir-4273 ; hsa-mir-4677-5p ; hsa-mir-6739-3p ; hsa-mir-7156-5p

Nearest miRNA

hsa-mir-1227/Upstream/142975; hsa-let-7e/Downstream/1505999;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/1768, chr19-CpG: 21/Downstream/3946

Upstream sequence

caggccCAGAAAGGAAGCTTTTGCAGAAAGCAGAGAAAAGGGTTTTGAGTTGTAAAAGTCTAGACCCAGAGGGGACTTAGAGAATGAATTACATTACAGC

Downstream sequence

AAGTCAAAGTACAAAGTCTAAGAGGAATGTCTACTCATTTGTAATAACAGCAGGTGAACAAGGTGAGGAACCTACTGGATATTAAAATACTGTAAATCTA