Basic Information
VIS ID
TVIS30002953
Fusion event
HIV-ANGPTL6 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
10214807/10104131 (Hg38)
End
10214807/10104131 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
ANGPTL6
Nearest miRNA
hsa-mir-1227/Upstream/65718; hsa-let-7e/Downstream/126282;
Nearest TSS
ENST00000633603/Upstream/1335; ENST00000430370/Downstream/2092;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/7456, chr19-CpG: 62/Downstream/2005
Nearby gene
ANGPTL6(No orient, 1382)
Upstream sequence
gcagtgagccactgcactccagcctgggcgacagagtaagactctgtctcaaaaaaaaaaaaaaaaaaaagaaaagaaaTAAAAATGTAAGATTTTGAGT
Downstream sequence
CCACATAATTATTTGTTGAAAATAATACAAGTCAGTATAATAGAGAAGCATTCATATATTCAACACTGTGAGACAAAACACCAGAGACCTTGGATTTGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate