VISDB Viral Integration Site DataBase

VIS ID

TVIS30002974

Fusion event

HIV-TNPO2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.13

Reference genome

Start

End

12820658/12709844 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-331-3p ; hsa-mir-186-5p ; hsa-mir-125a-5p ; hsa-mir-191-5p ; hsa-mir-615-3p ; hsa-mir-598-3p ; hsa-mir-92b-3p ; hsa-mir-25-3p ; hsa-mir-3176 ; hsa-mir-3190-5p ; hsa-mir-3922-3p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-4710 ; hsa-mir-625-5p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-8052 ; hsa-mir-6739-5p ; hsa-mir-3199 ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-6077 ; hsa-mir-6722-3p ; hsa-mir-1909-3p ; hsa-mir-6804-5p ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-6886-5p ; hsa-mir-6798-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-5584-5p ; hsa-mir-4779 ; hsa-mir-4318 ; hsa-mir-6873-5p ; hsa-mir-583 ; hsa-mir-1229-5p ; hsa-mir-580-3p ; hsa-mir-6824-5p ; hsa-mir-3132 ; hsa-mir-197-5p ; hsa-mir-3175 ; hsa-mir-6878-5p ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-6770-5p ; hsa-mir-1253 ; hsa-mir-6776-5p ; hsa-mir-6861-5p ; hsa-mir-6742-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-140-3p ; hsa-mir-6783-5p ; hsa-mir-6856-3p ; hsa-mir-6779-3p ; hsa-mir-4804-5p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-184 ; hsa-mir-605-3p ; hsa-mir-3910 ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-4328 ; hsa-mir-552-5p ; hsa-mir-302c-5p ; hsa-mir-7-2-3p ; hsa-mir-7-1-3p ; hsa-mir-5688 ; hsa-mir-495-3p ; hsa-mir-5582-3p ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-6815-3p ; hsa-mir-135a-5p ; hsa-mir-135b-5p ; hsa-mir-6772-3p ; hsa-mir-6749-3p ; hsa-mir-4268 ; hsa-mir-4448 ; hsa-mir-4469 ; hsa-mir-6870-3p ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-1306-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-224-3p ; hsa-mir-3165 ; hsa-mir-3616-3p ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-4690-5p ; hsa-mir-4722-3p ; hsa-mir-4755-3p ; hsa-mir-5006-5p ; hsa-mir-508-5p ; hsa-mir-5093 ; hsa-mir-522-3p ; hsa-mir-542-5p ; hsa-mir-5581-3p ; hsa-mir-665 ; hsa-mir-6727-3p ; hsa-mir-6777-5p ; hsa-mir-6840-3p ; hsa-mir-6872-3p ; hsa-mir-6880-5p ; hsa-mir-6889-5p ; hsa-mir-8071 ; hsa-mir-874-5p ; hsa-mir-378j ; hsa-mir-4782-5p ; hsa-mir-5706 ; hsa-mir-6839-5p

Nearest miRNA

hsa-mir-10395/Upstream/6180; hsa-let-7e/Downstream/77284;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/13097, chr19-CpG: 129/Downstream/11135

Upstream sequence

agtgctaggattacaggcatgagccaccacacctggccTTTTTAAAAAAttttttgtagaaagagggtttccctatgttgcccaggctggtctcggactc

Downstream sequence

ctgggctaaagcagttgtcctgcttcagcctcctgagtagctgggattacaggcgtgcaccacAGTAACTAGACAAATTTTAGACAAATTTTGAAAGCTT