VISDB Viral Integration Site DataBase

VIS ID

TVIS30002976

Fusion event

HIV-NACC1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.13

Reference genome

Start

End

13237000/13126186 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-218-5p ; hsa-mir-615-3p ; hsa-mir-185-5p ; hsa-mir-4776-3p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-192-3p ; hsa-mir-7111-3p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-608 ; hsa-mir-4651 ; hsa-mir-6848-5p ; hsa-mir-6846-5p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-4283 ; hsa-mir-4268 ; hsa-mir-6743-3p ; hsa-mir-5189-3p ; hsa-mir-600 ; hsa-mir-6845-3p ; hsa-mir-1304-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-7113-5p ; hsa-mir-6754-5p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-218-2-3p ; hsa-mir-1285-5p ; hsa-mir-1244 ; hsa-mir-4756-5p ; hsa-mir-4739 ; hsa-mir-1321 ; hsa-mir-130a-5p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-23c ; hsa-mir-582-5p ; hsa-mir-144-3p ; hsa-mir-101-3p ; hsa-mir-199a-3p ; hsa-mir-199b-3p ; hsa-mir-3129-5p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-216a-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-8085 ; hsa-mir-6787-5p ; hsa-mir-6731-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-6087 ; hsa-mir-6831-3p ; hsa-mir-665 ; hsa-mir-1972 ; hsa-mir-4459 ; hsa-mir-4779 ; hsa-mir-4695-5p ; hsa-mir-18a-5p ; hsa-mir-18b-5p ; hsa-mir-4735-3p ; hsa-mir-183-5p ; hsa-mir-7-5p ; hsa-mir-4725-5p ; hsa-mir-504-5p ; hsa-mir-6778-5p ; hsa-mir-1200 ; hsa-mir-1233-5p ; hsa-mir-6769a-5p ; hsa-mir-615-5p ; hsa-mir-6851-5p ; hsa-mir-3689d ; hsa-mir-6134 ; hsa-mir-7153-5p ; hsa-mir-146b-5p ; hsa-mir-146a-5p ; hsa-mir-589-5p ; hsa-mir-3192-5p ; hsa-mir-4251 ; hsa-mir-4324 ; hsa-mir-331-3p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-4723-5p ; hsa-mir-5698 ; hsa-mir-3175 ; hsa-mir-4261 ; hsa-mir-3688-3p ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-8485 ; hsa-mir-3941 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-1197 ; hsa-mir-1207-5p ; hsa-mir-1229-5p ; hsa-mir-1245b-3p ; hsa-mir-1273h-5p ; hsa-mir-133a-5p ; hsa-mir-1343-5p ; hsa-mir-138-5p ; hsa-mir-147a ; hsa-mir-149-3p ; hsa-mir-16-2-3p ; hsa-mir-17-3p ; hsa-mir-1827 ; hsa-mir-185-3p ; hsa-mir-1910-3p ; hsa-mir-1914-3p ; hsa-mir-194-3p ; hsa-mir-195-3p ; hsa-mir-197-5p ; hsa-mir-2110 ; hsa-mir-2467-3p ; hsa-mir-25-5p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3126-5p ; hsa-mir-3132 ; hsa-mir-3147 ; hsa-mir-3150a-3p ; hsa-mir-3153 ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-3184-5p ; hsa-mir-3196 ; hsa-mir-3612 ; hsa-mir-361-3p ; hsa-mir-3615 ; hsa-mir-3650 ; hsa-mir-3665 ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-3692-5p ; hsa-mir-3911 ; hsa-mir-3929 ; hsa-mir-3934-5p ; hsa-mir-423-5p ; hsa-mir-4271 ; hsa-mir-4300 ; hsa-mir-4419b ; hsa-mir-4425 ; hsa-mir-4455 ; hsa-mir-4478 ; hsa-mir-4493 ; hsa-mir-4508 ; hsa-mir-450a-2-3p ; hsa-mir-4519 ; hsa-mir-4640-5p ; hsa-mir-4688 ; hsa-mir-4712-3p ; hsa-mir-4725-3p ; hsa-mir-4726-5p ; hsa-mir-4728-5p ; hsa-mir-4731-5p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-485-5p ; hsa-mir-486-3p ; hsa-mir-491-5p ; hsa-mir-5194 ; hsa-mir-541-3p ; hsa-mir-544b ; hsa-mir-5591-5p ; hsa-mir-5681a ; hsa-mir-574-5p ; hsa-mir-595 ; hsa-mir-605-3p ; hsa-mir-6081 ; hsa-mir-6090 ; hsa-mir-6126 ; hsa-mir-6131 ; hsa-mir-637 ; hsa-mir-644a ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-654-5p ; hsa-mir-658 ; hsa-mir-663b ; hsa-mir-6726-5p ; hsa-mir-6732-5p ; hsa-mir-6733-5p ; hsa-mir-6734-5p ; hsa-mir-6738-5p ; hsa-mir-6739-5p ; hsa-mir-6743-5p ; hsa-mir-6747-5p ; hsa-mir-6752-5p ; hsa-mir-6762-3p ; hsa-mir-6763-5p ; hsa-mir-6769b-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6780b-5p ; hsa-mir-6781-5p ; hsa-mir-6782-5p ; hsa-mir-6783-5p ; hsa-mir-6785-5p ; hsa-mir-6786-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6802-5p ; hsa-mir-6808-5p ; hsa-mir-6810-5p ; hsa-mir-6815-5p ; hsa-mir-6816-5p ; hsa-mir-6825-5p ; hsa-mir-6827-5p ; hsa-mir-6829-5p ; hsa-mir-6835-5p ; hsa-mir-6842-5p ; hsa-mir-6857-5p ; hsa-mir-6859-3p ; hsa-mir-6861-5p ; hsa-mir-6865-5p ; hsa-mir-6867-5p ; hsa-mir-6873-5p ; hsa-mir-6875-5p ; hsa-mir-6877-5p ; hsa-mir-6883-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-6895-5p ; hsa-mir-7106-5p ; hsa-mir-7108-5p ; hsa-mir-7110-5p ; hsa-mir-7150 ; hsa-mir-7154-3p ; hsa-mir-744-5p ; hsa-mir-7847-3p ; hsa-mir-8088 ; hsa-mir-874-5p ; hsa-mir-887-5p ; hsa-mir-920 ; hsa-mir-92a-1-5p ; hsa-mir-92a-2-5p ; hsa-mir-937-3p ; hsa-mir-939-5p ; hsa-mir-940 ; hsa-mir-1265 ; hsa-mir-3691-5p ; hsa-mir-376b-5p ; hsa-mir-376c-5p ; hsa-mir-4292 ; hsa-mir-4491 ; hsa-mir-4657 ; hsa-mir-4752 ; hsa-mir-4764-5p ; hsa-mir-6791-5p ; hsa-mir-6846-3p ; hsa-mir-8056

Nearest miRNA

hsa-mir-10395/Upstream/185646; hsa-let-7e/Downstream/710101;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/7424, chr19-CpG: 23/Downstream/11997

Upstream sequence

aggctggagtgcattggcccgatctcggctcaccgcaaccttcgcctcctgagttcaagcgattctcctgcctcagcctcccgagtagctgggattacag

Downstream sequence

gcacgtaccactgtgcctggctaattttttgtatttttagtagagatggggtttcaccatgttagccaggatggtctctatctcctgacctcgtgacctc