Basic Information
VIS ID
TVIS30002983
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.12
Reference genome
GRCh37/hg19
Start
14622473/14511661 (Hg38)
End
14622473/14511661 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19B
Nearest miRNA
hsa-mir-10395/Upstream/438182; hsa-let-7e/Downstream/17882;
Nearest TSS
ENST00000633603/Upstream/15512; ENST00000599646/Downstream/5424;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/15088, chr19-CpG: 142/Downstream/5933
Nearby gene
DNAJB1(No orient, 3103)
Nearest cancer related gene
DNAJB1(TSG, No orient, 3103)
Upstream sequence
CAAggctgagcctataatcccagagctttgggaggccaaggtgggagaatcgcttggggccagAGCAACATATCAAGATATCAAGATATCGGCCAGCGCA
Downstream sequence
ggttcacgcctgtcatcccagcactttgggaggccgaggcaggtggatcacttgaggtcaggagttcaagaccagcctggccaacatggtgaaacccagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate