Basic Information
VIS ID
TVIS30002994
Fusion event
HIV-ANO8 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
17443234/17332425 (Hg38)
End
17443234/17332425 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
ANO8
miRNAs that regulate target gene
hsa-mir-32-5p ; hsa-mir-574-5p ; hsa-mir-4455 ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-6867-5p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-1266-3p ; hsa-mir-1282 ; hsa-mir-1290 ; hsa-mir-26b-3p ; hsa-mir-3167 ; hsa-mir-3978 ; hsa-mir-4265 ; hsa-mir-4296 ; hsa-mir-4322 ; hsa-mir-5004-3p ; hsa-mir-5692a ; hsa-mir-5707 ; hsa-mir-6078 ; hsa-mir-629-5p ; hsa-mir-6748-5p ; hsa-mir-6759-5p ; hsa-mir-6793-5p ; hsa-mir-6796-5p ; hsa-mir-6839-3p ; hsa-mir-876-5p
Nearest miRNA
hsa-mir-10395/Upstream/1882817; hsa-let-7e/Downstream/949652;
Nearest TSS
ENST00000633603/Upstream/16653; ENST00000598532/Downstream/2304;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/2916, chr19-CpG: 51/Downstream/731
Upstream sequence
ctgcaacctcgaactcctgggctcaagtgatgctaccgcctggacctcccaaagtactgggagccactgcgcctgTTCCCCTGCTTTAAATAAAGCTCAG
Downstream sequence
TTTGTGGACCCGAACGTCTGAGGAATGGTAAAAACTTGCTGTCGGAAGGTGAACTTGGGTGCCTAGTTTCCTGGAGGGGAATCCAACGCCCAGAGCCGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate