VISDB Viral Integration Site DataBase

VIS ID

TVIS30002996

Fusion event

HIV-SLC27A1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

p13.11

Reference genome

Start

End

17612203/17501394 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-30d-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-92a-2-5p ; hsa-mir-185-3p ; hsa-mir-762 ; hsa-mir-3151-5p ; hsa-mir-4271 ; hsa-mir-4459 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4505 ; hsa-mir-4711-5p ; hsa-mir-4725-3p ; hsa-mir-4747-5p ; hsa-mir-4779 ; hsa-mir-5001-5p ; hsa-mir-5196-5p ; hsa-mir-5787 ; hsa-mir-6783-5p ; hsa-mir-6780b-5p ; hsa-mir-6872-5p ; hsa-mir-4489 ; hsa-mir-4283 ; hsa-mir-4433a-3p ; hsa-mir-4768-3p ; hsa-mir-6515-5p ; hsa-mir-7106-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-7154-3p ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-5004-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-3937 ; hsa-mir-4739 ; hsa-mir-4756-5p ; hsa-mir-1321 ; hsa-mir-665 ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-7977 ; hsa-mir-6778-5p ; hsa-mir-1233-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6894-5p ; hsa-mir-7160-5p ; hsa-mir-6134 ; hsa-mir-7854-3p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-7162-3p ; hsa-mir-3664-3p ; hsa-mir-5690 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4695-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6499-3p ; hsa-mir-2467-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-1827 ; hsa-mir-4537 ; hsa-mir-6840-3p ; hsa-mir-1224-3p ; hsa-mir-4257 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-199a-5p ; hsa-mir-340-3p ; hsa-mir-4684-5p ; hsa-mir-6771-3p ; hsa-mir-6827-3p

Nearest miRNA

hsa-mir-10395/Upstream/2051786; hsa-let-7e/Downstream/780683;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/539, chr19-CpG: 105/Downstream/10114

Upstream sequence

GGCGGCCGTCGCAGACCCCCACAGCCTGCTGGACCCCAACGCGATATACCAGGAGCTGCAGAAGGTGCTGGCACCCTATGCCCGGCCCATCTTCCTGCGC

Downstream sequence

CTCCTGCCCCAGGTGGACACCACAGGTGCGAGTCTCCCCCACTCCAATCTCTCTCTTCATCCATCAGTGTGTCTGTTGATTCAtgtcttggtccattttg