Basic Information
VIS ID
TVIS30002997
Fusion event
HIV-MAP1S integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
17839951/17729142 (Hg38)
End
17839951/17729142 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA19B
Target gene
MAP1S
miRNAs that regulate target gene
hsa-mir-296-3p ; hsa-mir-505-3p ; hsa-mir-339-5p ; hsa-mir-1237-5p ; hsa-mir-1238-5p ; hsa-mir-1296-3p ; hsa-mir-1587 ; hsa-mir-328-5p ; hsa-mir-3620-5p ; hsa-mir-378g ; hsa-mir-3937 ; hsa-mir-4429 ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-4481 ; hsa-mir-4488 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4505 ; hsa-mir-4656 ; hsa-mir-4675 ; hsa-mir-4697-5p ; hsa-mir-4741 ; hsa-mir-4745-5p ; hsa-mir-4758-5p ; hsa-mir-5001-5p ; hsa-mir-5787 ; hsa-mir-6795-5p ; hsa-mir-6829-5p ; hsa-mir-6885-5p ; hsa-mir-6887-5p ; hsa-mir-7109-5p ; hsa-mir-762 ; hsa-mir-8077
Nearest miRNA
hsa-mir-10395/Upstream/2279534; hsa-let-7e/Downstream/552935;
Nearest TSS
ENST00000633603/Upstream/994; ENST00000601097/Downstream/3878;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/1135, chr19-CpG: 64/Downstream/18420
Upstream sequence
AAATTTAAATAGCGTATTTTATGTAACTGATTGGTTAGGAGGACCCGGCCTATGGTTGCACTCATAGcagagcaaaatcagcaaagagaaaaggcacata
Downstream sequence
gggtgaagtccaaaggaaaccaggcagaagcttccagaatcctctcccagtggggctgcacaccacaggcttcatttctccagtagcaagttgtaacagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate