Basic Information
VIS ID
TVIS30003001
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.11
Reference genome
GRCh37/hg19
Start
18148366/18037556 (Hg38)
End
18148366/18037556 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA19B
Nearest miRNA
hsa-mir-10395/Upstream/2587948; hsa-let-7e/Downstream/244521;
Nearest TSS
ENST00000633603/Upstream/28007; ENST00000601226/Downstream/49374;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/27525, chr19-CpG: 30/Downstream/14284
Nearby gene
IL12RB1(No orient, 21439)
Upstream sequence
accagctacttgggaggctgaggcaggagaatcgcttgaacccaggaggtggaggttgcagtgagccgagatcacgccattgcactccagcctgggtgac
Downstream sequence
agagtgaaactctgtctcaaaaaaaaaaaaaaaagaaaaagaaaaagaaaaaaaTTCAAATGCTTTATACAAAGTCTTCTGTTTTGGAAAACTCGTGTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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