Basic Information
VIS ID
TVIS30003014
Fusion event
HIV-chr19 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q11
Reference genome
GRCh37/hg19
Start
27734375/27243467 (Hg38)
End
27734375/27243467 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-10395/Upstream/6844113; hsa-let-7e/Downstream/7879233;
Nearest TSS
ENST00000633603/Upstream/3096766; ENST00000588318/Downstream/397171;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/3271510, chr19-CpG: 42/Downstream/550153
Upstream sequence
ccagaaactgcgtagtgaggtgtgtgtttaactcacagagtttaacctttcgtttcatacagcattttggaaacactctgtttgtaaagtctgcaagtgg
Downstream sequence
atatttggatctcttagatgccttcgttggaaacgggatttcttcatataatgctacagggaagaattcttagtaacttctttgtgttgtgtgtattcaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate