VISDB Viral Integration Site DataBase

VIS ID

TVIS30003017

Fusion event

HIV-ZNF507 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.11

Reference genome

Start

End

32857471/32366565 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-320b ; hsa-mir-7-5p ; hsa-mir-92a-3p ; hsa-mir-19b-3p ; hsa-mir-17-5p ; hsa-let-7b-5p ; hsa-mir-190a-3p ; hsa-mir-3681-5p ; hsa-mir-3915 ; hsa-mir-3928-3p ; hsa-mir-5011-5p ; hsa-mir-6849-5p ; hsa-mir-8056 ; hsa-mir-18a-5p ; hsa-mir-30a-5p ; hsa-mir-106a-3p ; hsa-mir-30c-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-30e-5p ; hsa-mir-18b-5p ; hsa-mir-4495 ; hsa-mir-4681 ; hsa-mir-4735-3p ; hsa-mir-4747-5p ; hsa-mir-4802-3p ; hsa-mir-5196-5p ; hsa-mir-590-3p ; hsa-mir-1301-3p ; hsa-mir-1286 ; hsa-mir-4660 ; hsa-mir-4722-5p ; hsa-mir-4775 ; hsa-mir-5047 ; hsa-mir-496 ; hsa-mir-374b-3p ; hsa-mir-3154 ; hsa-mir-1304-5p ; hsa-mir-6858-5p ; hsa-mir-4689 ; hsa-mir-1224-5p ; hsa-mir-1290 ; hsa-mir-876-5p ; hsa-mir-3167 ; hsa-mir-410-3p ; hsa-mir-605-5p ; hsa-mir-29b-2-5p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-493-3p ; hsa-mir-524-5p ; hsa-mir-520d-5p ; hsa-mir-143-5p ; hsa-mir-3944-5p ; hsa-mir-873-5p ; hsa-mir-3910 ; hsa-mir-3714 ; hsa-mir-124-3p ; hsa-mir-506-3p ; hsa-mir-6749-3p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-532-3p ; hsa-mir-1224-3p ; hsa-mir-6513-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-3150b-5p ; hsa-mir-3150a-5p ; hsa-mir-5010-3p ; hsa-mir-587 ; hsa-mir-6834-3p

Nearest miRNA

hsa-mir-10395/Upstream/11967211; hsa-let-7e/Downstream/2756135;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/20631, chr19-CpG: 142/Downstream/38504

Upstream sequence

tacatattctactttatgttcagatttttttgctcaacgtgtgtgtatgtgtgtgtctgtatagttccacctagcagaattgcatttcattgttacatag

Downstream sequence

tattccactgttaagaccaccgcaatttattcattgttctgtgaatagacatttgagttattgtaaggttttcctccctgatatgatctgataccatttt