Basic Information
VIS ID
TVIS30003027
Fusion event
HIV-ZNF567 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
37184353/36693451 (Hg38)
End
37184353/36693451 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZNF567
miRNAs that regulate target gene
hsa-mir-130b-3p ; hsa-mir-30b-5p ; hsa-mir-101-3p ; hsa-mir-19b-3p ; hsa-mir-652-3p ; hsa-mir-6884-3p ; hsa-mir-6826-5p ; hsa-mir-7151-5p ; hsa-mir-3120-3p ; hsa-mir-376b-3p ; hsa-mir-376a-3p ; hsa-mir-5579-3p ; hsa-mir-103b ; hsa-mir-95-5p ; hsa-mir-32-3p ; hsa-mir-4282
Nearest miRNA
hsa-mir-10395/Upstream/1347824; hsa-let-7e/Downstream/2716172;
Nearest TSS
ENST00000633603/Upstream/4051; ENST00000585696/Downstream/10230;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/5764, chr19-CpG: 53/Downstream/79028
Upstream sequence
ctgctatgcaagagggagaattgcttgagctgaggaagtcgaggctgcagtgagccatgatcatgccactgtattctagcctaggcaaagagtgagaccc
Downstream sequence
tgtctcaaaaataaaataaaaaTAAGACTTGAATAAAAGGACAGGAAGACACAACATGATAAAATGTCAAAACTTCCTTACATTTCATGGATTTCCATTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate