VISDB Viral Integration Site DataBase

VIS ID

TVIS30003029

Fusion event

HIV-ZFP30 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.12

Reference genome

Start

End

38132192/37641291 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-10a-5p ; hsa-mir-3942-3p ; hsa-mir-6803-5p ; hsa-mir-6751-5p ; hsa-mir-7109-5p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-92a-1-5p ; hsa-mir-555 ; hsa-mir-6881-5p ; hsa-mir-7110-5p ; hsa-mir-6842-5p ; hsa-mir-6752-5p ; hsa-mir-6835-5p ; hsa-mir-4756-3p ; hsa-mir-3919 ; hsa-mir-154-5p ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-337-3p ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-610 ; hsa-mir-410-3p ; hsa-mir-5011-5p ; hsa-mir-5580-3p ; hsa-mir-6082 ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-202-5p ; hsa-mir-2355-5p ; hsa-mir-6778-3p ; hsa-mir-4530 ; hsa-mir-1207-3p ; hsa-mir-646 ; hsa-mir-4279 ; hsa-mir-3653-5p ; hsa-mir-122-3p ; hsa-mir-3157-5p ; hsa-mir-1976 ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4691-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6868-3p ; hsa-mir-6780a-3p ; hsa-mir-6881-3p ; hsa-mir-7111-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-877-3p ; hsa-mir-4532 ; hsa-mir-1247-3p ; hsa-mir-1303 ; hsa-mir-744-3p ; hsa-mir-6873-3p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-6895-3p ; hsa-mir-4294 ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-6747-3p

Nearest miRNA

hsa-mir-10395/Upstream/2295664; hsa-let-7e/Downstream/1768332;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/46381, chr19-CpG: 119/Downstream/13634

Upstream sequence

catctactgaaggtcgctgcctacaaaactaccctctctctctacttcatcaatgttcctctctttgaaatcattctcgtagcctataaacatgttctaa

Downstream sequence

tatttcacatcgtaaaatatattccttgtactcttatgtatctgcttcccttctatggcaaaattcatccaaagaatagtttaaccttattttcatcatt