Basic Information
VIS ID
TVIS30003037
Fusion event
HIV-FCGBP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
40437404/39931497 (Hg38)
End
40437404/39931497 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
FCGBP
Nearest miRNA
hsa-mir-10395/Upstream/101695; hsa-let-7e/Downstream/351046;
Nearest TSS
ENST00000633603/Upstream/25174; ENST00000596386/Downstream/3129;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/6793, chr19-CpG: 39/Downstream/39107
Upstream sequence
acaaattaaaaccacagtgagatatcatctcactcgagttaaaatggcttttatcctaatgaaaggcagtaatgaatgctgctgagcatgtggagaaaag
Downstream sequence
ggaaccctgttaccctgttggtgggaatgtaaatcagtacaatcactatcgataataatatgaaggtttctcagaaaactaaaactagaactactgtatg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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