Basic Information
VIS ID
TVIS30003047
Fusion event
HIV-MIA-RAB4B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
41298599/40792694 (Hg38)
End
41298599/40792694 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA19A
Target gene
MIA-RAB4B
Nearest miRNA
hsa-mir-10395/Upstream/422787; hsa-let-7e/Downstream/1076933;
Nearest TSS
ENST00000633603/Upstream/7161; ENST00000596517/Downstream/4249;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/14323, chr19-CpG: 124/Downstream/5868
Upstream sequence
CCCACATATAAAACTCAAACACACATTTTCCTACCACCAGTATTCTTTCGTttcttggcactaaaatgaaagtcacataacatacatttacgtgactttt
Downstream sequence
caaagtgtacaattcagtggcattcagtacattcacagggttgtgcaatcaccacttctgtgttgttccagaatgttttctttttttttcttttcttttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate