Fusion event
HIV-TGFB1 integration
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reference genome
Not given
End
41839095/41333190 (Hg38)
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10395/Upstream/963283; hsa-let-7e/Downstream/536437;
Nearest cancer related gene
Upstream sequence
ttcctcagacagtcttatttcggggctcctgcatctgctgttccctctgcctgccttgctagtcccacagatacccactccagcttgttccttcacttca
Downstream sequence
ttTCTTCTTTttttttctatttttttttttttttttttttgagacagagtctcactctgtctgccaggctggagtgcagtggcatgatctcggctcactg
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.