VISDB Viral Integration Site DataBase

VIS ID

TVIS30003067

Fusion event

HIV-ZNF284 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr19

Cytoband

q13.31

Reference genome

Start

End

44589306/44085153 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-let-7e-5p ; hsa-mir-488-3p ; hsa-mir-101-3p ; hsa-mir-6730-5p ; hsa-mir-5681a ; hsa-mir-1272 ; hsa-mir-144-3p ; hsa-mir-4662b ; hsa-mir-4647 ; hsa-mir-4426 ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-7113-3p ; hsa-mir-6741-3p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-1306-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-4776-5p ; hsa-mir-4800-5p ; hsa-mir-8071 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-4736 ; hsa-mir-3665 ; hsa-mir-3619-3p ; hsa-mir-6842-3p ; hsa-mir-647 ; hsa-mir-6514-3p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-564 ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-1179 ; hsa-mir-498 ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-195-5p ; hsa-mir-298 ; hsa-mir-3613-3p ; hsa-mir-424-5p ; hsa-mir-4668-5p ; hsa-mir-497-5p ; hsa-mir-548e-5p ; hsa-mir-6838-5p

Nearest miRNA

hsa-mir-10395/Upstream/1733948; hsa-let-7e/Downstream/568533;

Nearest TSS

Nearest CpG islands

None/Target, chr19-CpG: 112/Upstream/12742, chr19-CpG: 38/Downstream/9068

Upstream sequence

cccggctttcaggtgatcacggccagaagggctacctcccttcgctctccttttgtgcttcgggtgtttcctgtcacttctctgctgaattccagtgatc

Downstream sequence

cctcttagatgctatttgatgtatgagtatctatttgctttttaaattttttagtaataaaatatatagaacacttcatgaatttgcatatcggccttgt