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Viral Integration Site DataBase
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TVIS30003077
Basic Information
VIS ID
TVIS30003077
Fusion event
HIV-ZC3H4 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
47609624/47106367 (Hg38)
End
47609624/47106367 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
ZC3H4
miRNAs that regulate target gene
hsa-mir-423-3p
;
hsa-mir-331-3p
;
hsa-mir-183-5p
;
hsa-mir-34a-5p
;
hsa-mir-26b-5p
;
hsa-mir-320a
;
hsa-mir-218-5p
;
hsa-mir-5706
;
hsa-mir-4782-5p
;
hsa-mir-516b-5p
;
hsa-mir-1299
;
hsa-mir-6077
;
hsa-mir-4455
;
hsa-mir-6128
;
hsa-mir-875-3p
;
hsa-mir-6514-5p
;
hsa-mir-4802-5p
;
hsa-mir-8076
;
hsa-mir-3163
;
hsa-mir-7-5p
;
hsa-mir-663b
;
hsa-mir-7155-3p
;
hsa-mir-3136-3p
;
hsa-mir-6778-3p
;
hsa-mir-1827
;
hsa-mir-361-3p
;
hsa-mir-4650-5p
;
hsa-mir-3065-3p
;
hsa-mir-6513-3p
;
hsa-mir-3677-5p
;
hsa-mir-940
;
hsa-mir-6893-5p
;
hsa-mir-6808-5p
;
hsa-mir-6510-5p
;
hsa-mir-4690-5p
;
hsa-mir-6165
;
hsa-mir-6871-3p
;
hsa-mir-1224-5p
;
hsa-mir-3650
;
hsa-mir-3915
;
hsa-mir-4436a
;
hsa-mir-4689
;
hsa-mir-4725-5p
;
hsa-mir-4751
;
hsa-mir-5000-3p
;
hsa-mir-5004-5p
;
hsa-mir-504-5p
;
hsa-mir-6858-5p
;
hsa-mir-7978
Nearest miRNA
hsa-mir-10395/Upstream/397013; hsa-let-7e/Downstream/120575;
Nearest TSS
ENST00000633603/Upstream/11880;
ENST00000594526/Downstream/5862;
Nearest CpG islands
None/Target,
chr19-CpG: 112/Upstream/57488
,
chr19-CpG: 20/Downstream/4784
Upstream sequence
CAATCCCGTGTGGAGAGAACATGGCAGCACCCAGGcagacatggtggcttatacctgtaatcccagcactttgggaggctgaggtggaggatcattgaag
Downstream sequence
ccaagagttcgaggctgcagtgagctattaatactatgaggtgccactgcattccagcctgggcaacagagcaaaaccctgtctcaataaaagagaaaaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Active CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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